Codex (Connectome Data Explorer)

# Codex (Connectome Data Explorer) **Entity class:** Concept or analytic term **Collection:** [[collections/Neurotech|Neurotech]] **Type:** Connectome exploration software **Primary source:** [[articles/2026 Annual Report on Brain-Computer Interfaces|2026 Annual Report on Brain-Computer Interfaces]] ## Relationships - Codex provides browser-based navigation of [[wiki/FlyWire|FlyWire]] neurons and [[wiki/Synaptic Pathway|synaptic pathways]]. - It was developed as part of the FlyWire data-access ecosystem and is distinct from OpenAI Codex or this vault's software tooling. - The source reports more than 10,000 registered users and thousands of searches per day.  This entry is routed through [[collections/Neurotech|Neurotech]] and [[collections/Consciousness Continuity|Consciousness Continuity]]. Its source context is developed in [[articles/2026 Annual Report on Brain-Computer Interfaces|2026 Annual Report on Brain-Computer Interfaces]], [[articles/Technologies for Consciousness Mapping and Transfer|Technologies for Consciousness Mapping and Transfer]], [[articles/The Architecture of Continuity and Emerging Neuroinformatics Standards|The Architecture of Continuity and Emerging Neuroinformatics Standards]], and [[articles/The Organic-Synthetic Brain Atlas|The Organic-Synthetic Brain Atlas]]. Status-qualified source edges are preserved in the terminal Research Edges section. ### Technology and research relationships - [[wiki/FlyWire|FlyWire]] is identified with the tool **Codex (Connectome Data Explorer)**. Web explorer for multiple Drosophila connectomes. ### Additional Documented Relationships - **Codex (Connectome Data Explorer)** is associated with [[wiki/Princeton Neuroscience Institute|Princeton Neuroscience Institute]]. - **Codex (Connectome Data Explorer)** is identified with the dataset [[wiki/BANC|BANC]]. Female adult fly brain + nerve cord. new whole-CNS-scale expansion. - **Codex (Connectome Data Explorer)** is associated with [[wiki/Arie Matsliah|Arie Matsliah]]. - **Codex (Connectome Data Explorer)** is associated with [[wiki/Amy Sterling|Amy Sterling]]. - **Codex (Connectome Data Explorer)** is identified with the dataset [[wiki/FAFB|FAFB]]. Female Adult Fly Brain.  ## Related Work in the Corpus  - In [[articles/2026 Annual Report on Brain-Computer Interfaces|2026 Annual Report on Brain-Computer Interfaces]], **FlyWire: Whole-Brain Completeness at Insect Scale** provides the narrative context for **Codex (Connectome Data Explorer)**: Tools developed include Codex (Connectome Data Explorer)—an open-access web interface enabling anyone with internet access to navigate neurons and synaptic pathways without downloading massive datasets, already used by over…  ## Research Edges  #### Master relationship graph patch — 2026-09-10 **Resolved aliases:** `Codex` **Collection:** [[collections/Neurotech|Neurotech]] **Relationship source:** [[research/Neurotechnology Ecosystem Relationship Graph - 2026-09-10|Neurotechnology Ecosystem Relationship Graph — 2026-09-10]] **Related source articles:** [[articles/The Architecture of Continuity and Emerging Neuroinformatics Standards|The Architecture of Continuity and Emerging Neuroinformatics Standards]] · [[articles/2026 Annual Report on Brain-Computer Interfaces|2026 Annual Report on Brain-Computer Interfaces]] · [[articles/The Organic-Synthetic Brain Atlas|The Organic-Synthetic Brain Atlas]] #### Outgoing typed edges - **Edge 334 — `developed_at` → [[wiki/Princeton Neuroscience Institute|Princeton Neuroscience Institute]]** — **VERIFIED**; evidence `CODEX_ABOUT`. - **Edge 335 — `creator` → [[wiki/Arie Matsliah|Arie Matsliah]]** — **VERIFIED**; evidence `CODEX_ABOUT`. - **Edge 336 — `creator` → [[wiki/Amy Sterling|Amy Sterling]]** — **VERIFIED**; evidence `CODEX_ABOUT`. - **Edge 337 — `dataset` → [[wiki/FAFB|FAFB]]** — **VERIFIED**; evidence `CODEX`. Female Adult Fly Brain. - **Edge 338 — `dataset` → [[wiki/BANC|BANC]]** — **VERIFIED**; evidence `CODEX`. Female adult fly brain + nerve cord; new whole-CNS-scale expansion. - **Edge 339 — `dataset` → [[wiki/MANC|MANC]]** — **VERIFIED**; evidence `CODEX`. Male Adult Fly Nerve Cord. - **Edge 340 — `dataset` → [[wiki/MAOL|MAOL]]** — **VERIFIED**; evidence `CODEX`. Male Adult Fly optic lobe. - **Edge 341 — `dataset` → [[wiki/MCNS|MCNS]]** — **VERIFIED**; evidence `CODEX`. Male Adult Fly CNS. #### Incoming typed edges - **Edge 333 — [[wiki/FlyWire|FlyWire]] `tool` → this entry** — **VERIFIED**; evidence `CODEX`. Web explorer for multiple Drosophila connectomes.   #### Consciousness mapping and transfer graph patch — 2026-09-10 **Collections:** [[collections/Neurotech|Neurotech]] · [[collections/Consciousness Continuity|Consciousness Continuity]] **Relationship source:** [[research/Consciousness Mapping and Transfer Ecosystem Relationship Graph - 2026-09-10|Consciousness Mapping and Transfer Ecosystem Relationship Graph — 2026-09-10]] **Related source articles:** [[articles/Technologies for Consciousness Mapping and Transfer|Technologies for Consciousness Mapping and Transfer]] · [[articles/The Architecture of Continuity and Emerging Neuroinformatics Standards|The Architecture of Continuity and Emerging Neuroinformatics Standards]] · [[articles/2026 Annual Report on Brain-Computer Interfaces|2026 Annual Report on Brain-Computer Interfaces]] · [[articles/The Organic-Synthetic Brain Atlas|The Organic-Synthetic Brain Atlas]] #### Incoming typed edges - **Edge 333 — [[wiki/FlyWire|FlyWire]] `tool` → this entry** — **PRIOR_NEUROTECH_VERIFIED**; evidence `CODEX`. Web explorer for multiple Drosophila connectomes.